[ONLINE] PATC: Introduction to Simulation Environments for Life Sciences
Date: 17/Mar/2021 Time: 09:00 - 18/Mar/2021 Time: 18:00
Place:
Online via Zoom
Target group: Level: (All courses are designed for specialists with at least 1st cycle degree or similar background experience) INTERMEDIATE: for trainees with some theoretical and practical knowledge.
Cost: There is no registration fee.
Primary tabs
| Agenda | |||||
| 17 March | 18 March | ||||
| 09.00 - 10.30 | Welcome & Introduction (JLG) | 09.00 - 10.30 | Simulation DBs and simulation data management patc.zip (PA) | ||
| 10.30 - 11.00 | Break | 10.30 - 11.00 | Break | ||
| 11.00 - 11.45 | Atomistic MD Algorithm (JLG) | 11.00 - 11.45 | MD a la carte (FC) | ||
| 11.45 - 12.30 | Algorithm improvements & HPC (JLG) | 11.45 - 12.30 | Introduction coarse-grained simulations (PDD) | ||
| 12.30 - 14.00 | Break | 12.30 - 14.00 | Break | ||
| 14.00 - 15.30 | Simulation Setup (FB) | 14.00 - 15.00 | Trajectory visualization (AH) | ||
| 15.30 - 16.30 | Break | 15.00 - 16.00 | Trajectory analysis (AH) | ||
| 16.30 - 18.00 | Setup and Analysis Hands On (AH) | 16.00 - 16.30 | Break | ||
| 16.30 - 18.00 | Survey and Report Writting | ||||
| JLG: Josep Ll. Gelpi (BSC - IRB - UB) | |||||
| FC: Francesco Colizzi (IRB) | |||||
| PA: Pau Andrio (BSC) | |||||
| FB: Federica Batistini (IRB - UB) | |||||
| AH: Adam Hospital (IRB) | |||||
| PDD: Pablo Dans (UDELAR - IP - IRB) | |||||